BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB008B08SP1|AL425813
(799 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig833 1477 0.0
>3x_Contig833
Length = 3148
Score = 1477 bits (744), Expect = 0.0
Identities = 784/792 (98%), Gaps = 5/792 (0%)
Strand = Plus / Minus
Query: 1 aacatcactattttctaatatagtattcagcggtggtactacaatgataccaggttttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 aacatcactattttctaatatagtattcagcggtggtactacaatgataccaggttttgg 783
Query: 61 tgatagagttctaaaggagttgaagttaagttgcgaaccgcagacaaaaatcaagatatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 tgatagagttctaaaggagttgaagttaagttgcgaaccgcagacaaaaatcaagatatt 723
Query: 121 cgcaccaccagaaagaaaatatagcacatggattggaggatcgatactctctggattatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 cgcaccaccagaaagaaaatatagcacatggattggaggatcgatactctctggattatc 663
Query: 181 aacgttcaaaaagatatgggtgacaaaaaaggagtgggaagaaaatccaagatgcgtaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aacgttcaaaaagatatgggtgacaaaaaaggagtgggaagaaaatccaagatgcgtaca 603
Query: 241 cgccagattcctatgaaaaacattcacggtaaaacaagtcaacaaacgagacaacaagga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 cgccagattcctatgaaaaacattcacggtaaaacaagtcaacaaacgagacaacaagga 543
Query: 301 tatataatctatcataactattttaaacgctttcaatgcaaagaggaaaggtgtaaatgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tatataatctatcataactattttaaacgctttcaatgcaaagaggaaaggtgtaaatgc 483
Query: 361 cataaaactgagagtacattaacgaagagattatttaaagtgaaaaaagatgcgagaaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cataaaactgagagtacattaacgaagagattatttaaagtgaaaaaagatgcgagaaca 423
Query: 421 taagtattataattgctgtttttgagttatgattgchttgagttttaacaatttactttt 480
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 422 taagtattatcattgctgtttttgagttatgattgcattgagttttaacaatttactttt 363
Query: 481 ctaagcmagtacgtaaacaataatggtcaacaacgataagcgagggacattagcgtaaat 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ctaagcaagtacgtaaacaataatggtcaacaacgataagcgagggacattagcgtaaat 303
Query: 541 gaatggacaagacggcgattgtgcaagttgtcaggtcgtgaaattctatagagtttgctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gaatggacaagacggcgattgtgcaagttgtcaggtcgtgaaattctatagagtttgctt 243
Query: 601 agatgcagtagtatctgtcaccgaaatcacccaaacctggcattaaatatttgttttcgt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agatgcagtagtatctgtcaccgaaatcacccaaacctggcattaaatatttgttttcgt 183
Query: 661 ccaaacctgcatctatagcaccggtaacgattctgacatttgggaatttagcatggtagt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ccaaacctgcatctatagcaccggtaacgattctgacatttgggaatttagcatggtagt 123
Query: 721 tatcgataccttccttggaacagattaagttcaagaagaagattctttctggcaacacac 780
|||||||||| ||||||| ||||||||||||| ||||| |||||||||||||| ||||||
Sbjct: 122 tatcgatacc-tccttgg-acagattaagttc-agaag-agattctttctggc-acacac 68
Query: 781 ctctttgaatca 792
||||||||||||
Sbjct: 67 ctctttgaatca 56
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6276
Number of Sequences: 1807
Number of extensions: 6276
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 799
length of database: 10,358,551
effective HSP length: 16
effective length of query: 783
effective length of database: 10,329,639
effective search space: 8088107337
effective search space used: 8088107337
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.8 bits)